PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00059.1.g00540.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LSD
Protein Properties Length: 76aa    MW: 8346.85 Da    PI: 7.7362
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00059.1.g00540.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD131.33.4e-10832125
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                    C+gCrt+L+ P GAp  RCa+C tV
  Zjn_sc00059.1.g00540.1.sm.mkhc  8 CSGCRTPLQLPHGAPCLRCAICGTV 32
                                    ************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578896.8E-5542No hitNo description
TIGRFAMsTIGR010532.3E-13534IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.30.60.205.6E-5738No hitNo description
PfamPF069434.5E-9832IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MTMMLIDCSG CRTPLQLPHG APCLRCAICG TVTHLKCPVY IHKGADNMYG KITGRDLDPQ  60
LTACDQFDVY AKPFSL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39422